List of open-source bioinformatics software – Wikipedia

Software Description Platform License Developer .NET Bio Language-neutral toolkit built using the Microsoft 4.0 .NET Framework to help developers, researchers, and scientists .NET Framework Apache Collaborative project AMPHORA Metagenomics analysis software Linux GPL ? Anduril Component-based workflow framework for data analysis Linux, Mac OS X, Windows GPL University of Helsinki AutoDock Suite of automated docking tools ? GPL ? Biochemical Algorithms Library (BALL) C++ library and framework for molecular modeling and visualization designed for rapid prototyping Linux, Mac OS X, Windows LGPL BALL project team Bioclipse Visual platform for chemo- and bioinformatics based on the Eclipse Rich Client Platform (RCP) ? Eclipse Public The Bioclipse Project Bioconductor R (programming language) language toolkit Linux, Mac OS X, Windows Artistic 2.0 Fred Hutchinson Cancer Research Center BioJava Java Linux, Mac OS X, Windows LGPL v2.1 Open Bioinformatics Foundation BioJS JavaScript Web browser Apache ? BioJulia Julia Linux, Mac OS X, Windows MIT License BioJulia Bioinformatics and Computational Biology in Julia BioMOBY Registry of web services Web browser Artistic Open Bioinformatics Foundation BioPerl Perl language toolkit Cross-platform Artistic, GPL Open Bioinformatics Foundation BioPHP PHP language toolkit ? GPL v2 Open Bioinformatics Foundation Biopython Python language toolkit Cross-platform Biopython[1] Open Bioinformatics Foundation BioRuby Ruby language toolkit ? GPL v2 or Ruby Open Bioinformatics Foundation EMBOSS Suite of packages for sequencing, searching, etc. ? GPL and LGPL Collaborative project Galaxy Scientific workflow and data integration system Unix-like Academic Free Pennsylvania State University and Emory University GenePattern Scientific workflow system that provides access to more than 150 genomic analysis tools Unix-like (public server); Linux, Mac OS X, Windows MIT Broad Institute Geworkbench Genomic data integration platform Linux, Mac OS X, Windows License Columbia University GMOD Toolkit to address many common challenges at biological databases Unix-like (server), Web browser (client) Varies depending on tool Collaborative project GenGIS Application that allows combining digital map data with information about biological sequences collected from the environment Windows, Mac OS X GPL Collaborative project Genomespace Centralized web application that provides data format transformations and facilitates connections with other bioinformatics tools Web browser LGPL Broad Institute, Collaborative project GENtle An equivalent to the proprietary Vector NTI, a tool to analyze and edit DNA sequence files ? GPL Magnus Manske Integrated Genome Browser Java-based desktop genome browser Linux, Mac OS X, Windows Common Public 1.0 GenoViz InterMine Extensive data warehouse system for the analysis and integration of biological datasets Cross-platform LGPL University of Cambridge LabKey Server Software platform, allows organizations to integrate, analyze, and share complex biomedical data Linux, Mac OS X, Windows Apache LabKey Software Foundation mothur Software for analysis of the 16S rRNA gene Linux, Mac OS X, Windows The University of Michigan PathVisio Desktop software for drawing, analysing, and visualizing biological pathways Linux, Mac OS X, Windows Apache 2.0 Maastricht University Orange Component-based data mining and machine learning software suite, featuring a visual programming front-end for exploratory data analysis and interactive visualization, and Python bindings and libraries for scripting Linux, Mac OS X, Windows GPL University of Ljubljana Staden Package Sequence assembly, editing, and analysis, mainly consisting of gap4, gap5, and spin. Linux, Mac OS X, Windows BSD Wellcome Trust Sanger Institute, Medical Research Council Taverna workbench Tool to design and execute workflows Linux, Mac OS X, Windows LGPL myGrid UGENE Integrated bioinformatics tools Linux, Mac OS X, Windows GPL 2 Unipro Unipept Metaproteomics biodiversity analysis Web browser MIT Ghent University

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List of open-source bioinformatics software - Wikipedia